Package: fssemR 0.1.8

fssemR: Fused Sparse Structural Equation Models to Jointly Infer Gene Regulatory Network

An optimizer of Fused-Sparse Structural Equation Models, which is the state of the art jointly fused sparse maximum likelihood function for structural equation models proposed by Xin Zhou and Xiaodong Cai (2018 <doi:10.1101/466623>).

Authors:Xin Zhou, Xiaodong Cai

fssemR_0.1.8.tar.gz
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fssemR_0.1.8.tar.gz(r-4.5-noble)fssemR_0.1.8.tar.gz(r-4.4-noble)
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fssemR.pdf |fssemR.html
fssemR/json (API)

# Install 'fssemR' in R:
install.packages('fssemR', repos = c('https://ivis4ml.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/ivis4ml/fssemr/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

24 exports 4 stars 1.10 score 24 dependencies 35 scripts 242 downloads

Last updated 2 years agofrom:31eac8eff0. Checks:OK: 1 ERROR: 8. Indexed: yes.

TargetResultDate
Doc / VignettesOKAug 21 2024
R-4.5-win-x86_64ERRORAug 21 2024
R-4.5-linux-x86_64ERRORAug 21 2024
R-4.4-win-x86_64ERRORAug 21 2024
R-4.4-mac-x86_64ERRORAug 21 2024
R-4.4-mac-aarch64ERRORAug 21 2024
R-4.3-win-x86_64ERRORAug 21 2024
R-4.3-mac-x86_64ERRORAug 21 2024
R-4.3-mac-aarch64ERRORAug 21 2024

Exports:cv.multiFSSEMiPALMcv.multiFSSEMiPALM2cv.multiNFSSEMiPALM2cv.multiRegressionFDRflinvBfloneBimplFSSEMinverseBinvoneBmultiFSSEMiPALMmultiFSSEMiPALM2multiNFSSEMiPALM2multiRegressionopt.multiFSSEMiPALMopt.multiFSSEMiPALM2opt.multiNFSSEMiPALM2pninvBpnoneBrandomFSSEMdatarandomFSSEMdata2randomFSSEMdata4CorTPRtransx

Dependencies:clicodetoolscpp11foreachglmnetglueigraphiteratorslatticelifecyclemagrittrMASSMatrixmvtnormpkgconfigqtlRcppRcppEigenrlangshapestringistringrsurvivalvctrs

fssemR: Fused Sparse Structural Equation Models to Jointly Infer Gene Regulatory Networks

Rendered fromfssemR.Rmdusingknitr::rmarkdownon Aug 21 2024.

Last update: 2019-06-03
Started: 2019-05-31

Readme and manuals

Help Manual

Help pageTopics
cv.multiFSSEMiPALMcv.multiFSSEMiPALM
cv.multiFSSEMiPALM2cv.multiFSSEMiPALM2
cv.multiNFSSEMiPALM2cv.multiNFSSEMiPALM2
cv.multiRegressioncv.multiRegression
cwiseGradient4FSSEMcwiseGradient4FSSEM
FDRFDR
flinvBflinvB
floneBfloneB
Solving Sparse Structural Equation ModelfssemR package-fssemR
implFSSEMimplFSSEM
initLambdaiPALMinitLambdaiPALM
initLambdaiPALM2initLambdaiPALM2
initLambdaiPALM3initLambdaiPALM3
initRhoiPALMinitRhoiPALM
initRhoiPALM2initRhoiPALM2
initRhoiPALM3initRhoiPALM3
inverseBinverseB
invoneBinvoneB
logLikFSSEMlogLikFSSEM
logLikNFSSEMlogLikNFSSEM
multiFSSEMiPALMmultiFSSEMiPALM
multiFSSEMiPALM2multiFSSEMiPALM2
multiNFSSEMiPALM2multiNFSSEMiPALM2
multiRegressionmultiRegression
obj.multiRegressionobj.multiRegression
opt.multiFSSEMiPALMopt.multiFSSEMiPALM
opt.multiFSSEMiPALM2opt.multiFSSEMiPALM2
opt.multiNFSSEMiPALM2opt.multiNFSSEMiPALM2
pninvBpninvB
pnoneBpnoneB
proc.centerFSSEMproc.centerFSSEM
proc.centerFSSEM2proc.centerFSSEM2
randomFSSEMdatarandomFSSEMdata
randomFSSEMdata2randomFSSEMdata2
randomFSSEMdata4CorrandomFSSEMdata4Cor
TPRTPR
transxtransx